Protein Info for HP15_3916 in Marinobacter adhaerens HP15

Annotation: sodium-dependent transporter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details amino acids 102 to 126 (25 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 226 to 253 (28 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 315 to 339 (25 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 400 to 425 (26 residues), see Phobius details amino acids 443 to 464 (22 residues), see Phobius details PF00209: SNF" amino acids 16 to 131 (116 residues), 88.4 bits, see alignment E=2.3e-29 amino acids 161 to 464 (304 residues), 74.1 bits, see alignment E=5e-25

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 89% identity to maq:Maqu_0263)

Predicted SEED Role

"Sodium-dependent transporter family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PJX0 at UniProt or InterPro

Protein Sequence (465 amino acids)

>HP15_3916 sodium-dependent transporter family protein (Marinobacter adhaerens HP15)
MTQSNSVSGNGSVAARGLWSSRLAFILAATGSAVGLGNIWKFPYVTGENGGGAFVLVYLL
CIAVIGIPIMMAEVFIGRNGRHNPITSMRLVAERNLSAPGWRISAIIGMIAAFVILSFYS
VIGGWAASYVGHAAMGDFTGGTADSIGELFGGLLASPGQLLLWHTIFMALVILVVSQGLK
GGLERAVTILMPALFLLLLVAVGYATTTGHFGEAVSFLFTPDFGALTINGVLIALGHAFF
TLSLGMAIMMAYGSYLGRDVSIGRTAVSVAIMDTVVALLAGLAIFPVVFANGLEAGAGPG
LIFQTLPLAFGNMPMGGLFGTLFFILLLFAAWTSGISLLEPVVEWVEEKTSLARTGSSIL
VGVLCWALGIASILSLNVWADVAPLAMFERFEGKTIFDLLDFFTANVLLPLSGLLTAVFV
GWFVAKESLKSDLALQGGAFTLWYNLIRFVTPIAVAIVFFYNLMS