Protein Info for Psest_4029 in Pseudomonas stutzeri RCH2

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 39 to 64 (26 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 120 to 144 (25 residues), see Phobius details PF09335: SNARE_assoc" amino acids 26 to 140 (115 residues), 58.6 bits, see alignment E=4.6e-20

Best Hits

KEGG orthology group: None (inferred from 96% identity to pmy:Pmen_2244)

Predicted SEED Role

"probable membrane protein YPO3302"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (146 amino acids)

>Psest_4029 Predicted membrane protein (Pseudomonas stutzeri RCH2)
MWELSGYLGLFLAAFSAATLIPAQSEAVLTGLLISGNYSVVMLLVVATAGNVLGSALNWL
LGLYIERYRHKRWFPVSDDKLARAQRAYHRYGRWSLLLSWVPIIGDPLTLIAGVMREPFW
SFLLIVLLAKAARYLVLTVVTLGIMG