Protein Info for Psest_3996 in Pseudomonas stutzeri RCH2

Annotation: Transcriptional accessory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 777 PF09371: Tex_N" amino acids 8 to 191 (184 residues), 240.2 bits, see alignment E=4.8e-75 PF16921: Tex_YqgF" amino acids 324 to 449 (126 residues), 180 bits, see alignment E=8.5e-57 PF14635: HHH_7" amino acids 462 to 554 (93 residues), 30.9 bits, see alignment E=1e-10 PF12836: HHH_3" amino acids 489 to 553 (65 residues), 103.2 bits, see alignment E=2.3e-33 PF03934: T2SSK" amino acids 494 to 542 (49 residues), 25.5 bits, see alignment 4.8e-09 PF17674: HHH_9" amino acids 559 to 628 (70 residues), 92.2 bits, see alignment E=1e-29 PF00575: S1" amino acids 646 to 718 (73 residues), 74.7 bits, see alignment E=2.1e-24

Best Hits

Swiss-Prot: 61% identical to YHGF_NEIMA: Uncharacterized protein NMA0194 (NMA0194) from Neisseria meningitidis serogroup A / serotype 4A (strain Z2491)

KEGG orthology group: K06959, uncharacterized protein (inferred from 95% identity to psa:PST_0278)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GSY6 at UniProt or InterPro

Protein Sequence (777 amino acids)

>Psest_3996 Transcriptional accessory protein (Pseudomonas stutzeri RCH2)
MDSINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRY
LRELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAG
LGELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRD
FLKHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVG
DETPGSMHPGEGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDKAE
DDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHAPRN
DWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLKLTKIMVSEAGASV
YSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARS
LDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVPRL
GEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFLKRLDP
KQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVT
NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGLSMRMS
DTPGAKTDGPRGGQARGSAGKPQGNTPRSERHAKEDKPAPANAAMAALFANAKQLRK