Protein Info for Psest_3982 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 58 to 77 (20 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 308 to 338 (31 residues), see Phobius details amino acids 397 to 418 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_0300)

Predicted SEED Role

"putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GR31 at UniProt or InterPro

Protein Sequence (436 amino acids)

>Psest_3982 hypothetical protein (Pseudomonas stutzeri RCH2)
MLASLATRAAALINARPGELRAALAGFGLFFCLFAGYFMLRPIRESMGIQGGVENLQWLF
TATFFAMLVAVPLFAWLNSRVARIHYIDWVYGFFCLNLLFFAGLFFLLRDSIWLARVFYV
WISVYNLFVVSVAWSLMADVFDAPQARRLFAFIAAGASVGGLVGPALSALLVGVLGQFGL
MLLAALLLAVAVAIKHYLMAWRELLGAGRPGAEHAESPNRPVAGNPFSGLTRVLGSGYLL
GVAAFVLLLTTASTFLYFEQARLVAELFPDRAEQVRVFGAIDFVVQAGALLSQLFITGRV
AQRLGVRVLLAAVPALVCLGFIGLALAPTFAVLAALMIVRRIGEYAFVRPGREMLFAPLD
AESKYKAKNFIDTVVYRGGDALSGWAKSLLDSLGHGAWLVALVGAICAAVWGAVGWFLGG
RADLASKRTDTTRQAA