Protein Info for PGA1_78p00610 in Phaeobacter inhibens DSM 17395

Annotation: putative plasmid partition protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 303 to 318 (16 residues), see Phobius details PF13614: AAA_31" amino acids 132 to 323 (192 residues), 105.1 bits, see alignment E=8.9e-34 PF09140: MipZ" amino acids 134 to 185 (52 residues), 25.8 bits, see alignment 1.3e-09 PF01656: CbiA" amino acids 135 to 378 (244 residues), 60.2 bits, see alignment E=4.1e-20

Best Hits

KEGG orthology group: None (inferred from 94% identity to sit:TM1040_3406)

Predicted SEED Role

"Plasmid replication protein RepA" in subsystem Plasmid replication

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F2T0 at UniProt or InterPro

Protein Sequence (456 amino acids)

>PGA1_78p00610 putative plasmid partition protein A (Phaeobacter inhibens DSM 17395)
MTSPTLPPYFNLDPEQAAAKLPDPIQTTRFAKAAAMCSKGREDLARRGYAPDGEKRLRKF
STWEITRYLIPVAPQHLRRVLKNHPDLPQGEGEGGSKWFTLEEVLALRQHFASEGISTKE
YLPYRPKGVPAKVTAVANFKGGVGKTSTAAHLAMSAALDGYKVLVIDLDSQGSMTSILGG
TVEDEWSTVFPLIAKDYAKSVVAENAVRAAAGEPELPLDETLNEALRVSSRNVIQKTHWS
NIDLIGAQLNLYWAEFQIPVWRMGLRSWPLWDALSNFLEQEGILDDYDIVFLDTPPALGY
LTINALAAADILLVPLGASFLEFDSTGRFFDMLYSTFASIEEGENMAQRAAGLPEIKFEW
DVVRALITRFDASQQTDMANVIQAYFGDFMNAYRQDVTALVGQAGEQVNGIYEADYRDFN
RDTYVRGRETFDRTYAEFKELLIGSWWRDTQMEEAE