Protein Info for PGA1_78p00580 in Phaeobacter inhibens DSM 17395

Annotation: two-component system sensor-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 265 to 287 (23 residues), see Phobius details PF00497: SBP_bac_3" amino acids 41 to 254 (214 residues), 109.2 bits, see alignment E=5.8e-35 PF12860: PAS_7" amino acids 310 to 422 (113 residues), 27.7 bits, see alignment E=6.4e-10 PF02518: HATPase_c" amino acids 556 to 660 (105 residues), 85.5 bits, see alignment E=8.7e-28 PF13581: HATPase_c_2" amino acids 565 to 656 (92 residues), 28.9 bits, see alignment E=2.4e-10

Best Hits

KEGG orthology group: None (inferred from 42% identity to sit:TM1040_3795)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E6U7 at UniProt or InterPro

Protein Sequence (675 amino acids)

>PGA1_78p00580 two-component system sensor-like protein (Phaeobacter inhibens DSM 17395)
MVGRHLQALYSLMFRQLLLVILLVTGPAVATMATAEPIRMTYEEFHPYSFTDSTGQPQGV
SIDIMRLIADAAGQEVVFQPTQNPAGMLEELRSGAADVTSLLALTPERLAAGLATEELGA
FELRAFVRGHGSVANLGDLTGTTVGVVRGSFAVSGARLIPFAKLVEFDTTDDLILPLLTG
EIDAVVSAHNGFLRRLRTAEVEDRIVALEPPLVTSPYGFVVAAENEPLRTVLNAAIYSSV
SDKFLSELEQTWFGRSRTLWDNVLVRWGLLISAVMLAAILVLGYWFFHYRKRSAELSRDR
ASDQLLISALDEVAAAIVIYDSNLKAVHWNHGFELIFPSMVPSLKKGATMRQLILQSYVD
GTIQNQLDDAEVFEKVDGIIEDLRRGRSEMRTVRTQDGRVFQARDVKLGARHYASLRVDV
SQLQKQQDTIAQQAVSLEAANEDLRTFSSIAAHDLKAPLFSLLNLIDFMAEDMEEAGITL
PPDIQTNWAQMERLSHRMMRLVQDLLVYSTTQSESHRSEVIEPSPRLQEVLDLAGPREGF
EVIIEANMPQLQVNPIAFDMVMRNLIVNALQHHDRDRGTIILSAQSTDDAVMLSVCDDGP
GIPEEHYEQIFAPFHRLSASTEGSGLGLAFIKKTVESWGGTVQVSAAQPRGTVFTVSFPQ
SVAQDGDADQQQLAG