Protein Info for Psest_3909 in Pseudomonas stutzeri RCH2

Annotation: Glucose/sorbosone dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07995: GSDH" amino acids 175 to 415 (241 residues), 47.3 bits, see alignment E=9.4e-17

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_0366)

Predicted SEED Role

"L-sorbosone dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GSV1 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Psest_3909 Glucose/sorbosone dehydrogenases (Pseudomonas stutzeri RCH2)
MKIPCLTLSALLTLSCAAAIAAPTSDEALERMRSMKTTGQSLDMKTIAQDGPTADAIRDN
LKRIKLPEGFRIDLYAVVPDARHMAVGPSSGVVFVGTRKTDLWAVTDRTKNRTADEVKRF
APAISFTQPGPCFSPDGFLFVAEHNRVLVFPAAEFFYEGPDVAADIVVPTGELIPKDEES
YNHGARVCAISPGNKLTISLGQPHNVQPKEKRELYEQHGIGGIVRMERDGSKREVYATGV
RNSVGVTYHPTTKELWFTDNQVDGMGDDTPPGEINHAPKAGMKFGMPWYGGGQVRTNEYA
DETPPEGLTPPVVETTAHAADMGLTFYTGKQFPEQYRGGLFSAQRGSWNRTVPAGARVMF
TPFAADGSGPSGETVPFAEGWLDEETGEYYGRIVDVAQLKDGSLLVSDDTAGAIYRISYQ
GK