Protein Info for Psest_3897 in Pseudomonas stutzeri RCH2

Annotation: Protein of unknown function (DUF2628).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 transmembrane" amino acids 60 to 77 (18 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 113 to 128 (16 residues), see Phobius details PF10947: DUF2628" amino acids 56 to 131 (76 residues), 40.1 bits, see alignment E=2.1e-14

Best Hits

KEGG orthology group: None (inferred from 82% identity to psa:PST_0374)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRF1 at UniProt or InterPro

Protein Sequence (142 amino acids)

>Psest_3897 Protein of unknown function (DUF2628). (Pseudomonas stutzeri RCH2)
MSTQNPYAPPLAPLTGAEAGRIEALPVSDSWKRRFQAIAQAGGPRLPAFKSLSAAERRQA
MAFNILAFLFGPLYYLAKGMWRRALSYTLLALGAVTLIIMGLDVVGYGDFARFLAYGVAG
VFAMRANLDFYKSQVLGDNGWL