Protein Info for Psest_3880 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07012: Curlin_rpt" amino acids 210 to 241 (32 residues), 30 bits, see alignment 2e-11

Best Hits

KEGG orthology group: None (inferred from 68% identity to psa:PST_0392)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GSJ7 at UniProt or InterPro

Protein Sequence (293 amino acids)

>Psest_3880 hypothetical protein (Pseudomonas stutzeri RCH2)
MFKPVAIASLLALGATQALAENSIELEQRGADNVAELQQLGLVESSTIDVSQIGNLNEAS
VTQVGEAYFKVANLQQIGNANLATVEQTGRTSTLNASSVGNGNRIDASQTSFVSAQVDQR
GDDNQLTFRQEGFFEGAQLSVSQDGLGNMADIFQGDGNRMTLAQIGSYNTADIHQSDYHN
ELDFTQNGDSNRLTVEQNGFGGRISGSSTGSGNSVDIAQRFMSNQATVIQNGNDNLASIE
QGNYSHQATITQMGSANEAIIRQSLPTNDYTRLPSAAAIHQSGIGNSATIVQQ