Protein Info for Psest_0382 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 134 to 157 (24 residues), see Phobius details amino acids 181 to 208 (28 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 367 to 390 (24 residues), see Phobius details amino acids 402 to 422 (21 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details amino acids 466 to 489 (24 residues), see Phobius details PF03929: PepSY_TM" amino acids 10 to 357 (348 residues), 212.5 bits, see alignment E=6.3e-67

Best Hits

Predicted SEED Role

"FIG138928: iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GE49 at UniProt or InterPro

Protein Sequence (508 amino acids)

>Psest_0382 Uncharacterized iron-regulated membrane protein (Pseudomonas stutzeri RCH2)
MKLRQSMAGLHTWGGLLPSWLLFVIIFAGTVACFDKELSRWMRPALHDGVVSSLGADDVH
GWLQQNVSEELHAFWMHGPTEREPYWRLGWEVDATKTIHNVAFDPRSAQAEPMAETVGGE
FFFKLHYNLHAGDIGMYIVGLAGMFMLVALVSGVIIHRRIFKDFFTLRPKANGQRAWLDA
HNLFGVVGFPFHLVLAYTGVAIFVASYMPAAAQVSYSGNVMQYFGEVMGSFEREEVGQPP
PAPVSLDALMVESQRQWGGGEAGWVSVHHPDDASAVVDVRRRDRSRIGSPQDTLSYDAGT
GELLNRQDASTGYRAYLWLAGLHMAQFGGTLVRLLYLLMGLAGCAMLVGGLQVWLAKREQ
RGDASVVWVRALNASVFAGLPLASLALLWGNRLIPAGFAERAVAEGWVFAGAWLLVALWS
VLRRQQARQLLREQLLIGAALALGLPLINALSSDGHLIASLGRGDWALASVDLFMIVAGL
ICATCAWRLNTTPAAAAVRGRATRVQEA