Protein Info for PGA1_262p01690 in Phaeobacter inhibens DSM 17395

Annotation: peptidase S15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 659 TIGR00976: hydrolase CocE/NonD family protein" amino acids 16 to 498 (483 residues), 215.8 bits, see alignment E=7.3e-68 PF02129: Peptidase_S15" amino acids 16 to 263 (248 residues), 226.7 bits, see alignment E=1.3e-70 PF00326: Peptidase_S9" amino acids 58 to 151 (94 residues), 29.8 bits, see alignment E=1.2e-10 PF00561: Abhydrolase_1" amino acids 59 to 141 (83 residues), 29.5 bits, see alignment E=1.9e-10 PF12697: Abhydrolase_6" amino acids 60 to 240 (181 residues), 27.1 bits, see alignment E=2e-09 PF08530: PepX_C" amino acids 292 to 509 (218 residues), 117.5 bits, see alignment E=2.5e-37

Best Hits

Predicted SEED Role

"Mll5128 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F4R1 at UniProt or InterPro

Protein Sequence (659 amino acids)

>PGA1_262p01690 peptidase S15 (Phaeobacter inhibens DSM 17395)
MPQVAVIENEWITLPDGRRLAARLWMPSGVGPFPAILEYLPYRKRDGTAARDETTHGVFA
KAGYACIRVDIAGTGDSDGSFDDEYSEQELSDGEAVLAWIASRDWCDGNVGMIGISWGGF
NGLQLAFRQPEALKAVVSVASTTDRYADDIHFMGGCLLSDNANWASQMFAYQSRPPDPAL
RPDWREVWIERMEALPFMAADWLAHPTRDDFWKHGSVCEDYARIKAPVLAITGWADAYVN
APTQLAENLTVPVKALMGPWEHRYAHISKLGAADFHSEVLGWFDRWLKEEQNGAEDLPDY
RVFMQEHFDPTTQNKSRQGRWVAEAKWPSPNVTMRSMCLGDGQLTDTPQSGECVVATPAH
VGQSSGVFCPGMRIDNELAGDQCADDSLSVCFDLPLDAPMELLGRAALHITFTVDVPVAQ
IVARLCDVSPDGVSQRISYRPLNLTHHQSHETPEPLVPGQRYGACIALNECAHHLRAGHR
LRLALSNSYWPIVWPSPTLTTITLDLQNCRLDLPLRNASSEIDPAAPMDSQDFPTYATDV
IRPPSATASTKTADDGTITKKTFDDYGAARDPLHGLEVGSHVTTRYAIHPEDPTAARFDA
QWLFTFQRDEWSVEIQTENTMTCDADNFYLKRNLRAVQGADRTEVLTKEWSQAVPRGLL