Protein Info for PGA1_262p01590 in Phaeobacter inhibens DSM 17395

Annotation: Protein of unknown function (DUF2796).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF10986: DUF2796" amino acids 25 to 133 (109 residues), 92.9 bits, see alignment E=1.1e-30 amino acids 134 to 216 (83 residues), 61.3 bits, see alignment E=6e-21

Best Hits

KEGG orthology group: None (inferred from 52% identity to rde:RD1_1739)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F4Q5 at UniProt or InterPro

Protein Sequence (223 amino acids)

>PGA1_262p01590 Protein of unknown function (DUF2796). (Phaeobacter inhibens DSM 17395)
MKRTLSLFAIIAALPALAEGTRELDAHEHGVGTLNIAIETTKVAMEFKAPGADIVGFEYA
AKSETDISAVNAAIATLNTPLQLFVVPDSALCSIVDAHAALAGEEEHEEHANEHAHEAHT
DEQHTHDHGHEDHEKHDGAEHEEHGHEEHHGDHHDGHAEHPAHSEFYANYLLDCENPEAL
SEMTFAYFSAFPQAQRVDVQVIKSTGARAYQVDRNAPVLNLEP