Protein Info for Psest_3780 in Pseudomonas stutzeri RCH2

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF09339: HTH_IclR" amino acids 11 to 59 (49 residues), 57.7 bits, see alignment 2e-19 PF12802: MarR_2" amino acids 17 to 59 (43 residues), 32.1 bits, see alignment 2.7e-11 PF01614: IclR_C" amino acids 89 to 248 (160 residues), 115 bits, see alignment E=7.1e-37

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_0495)

Predicted SEED Role

"Transcriptional regulator, IclR family" in subsystem Homogentisate pathway of aromatic compound degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GS92 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Psest_3780 Transcriptional regulator (Pseudomonas stutzeri RCH2)
MRSIPREKGSSITRVLEIIEAVAAAKEPLSPTALAERLDIPKASAHRLVQTLEKEGFLQF
GLRGGLLPGERLHVAALNILRSSRHNALRQAILRQLSEAIGETCGLAIPDGLDMLYFDRV
QTNWPLQINLPIGSHTPLWCTASGKLYLASLPPEQLERVLPRLPLQRMARNTLTDLSALR
DDLARVREEQLGTDCEEFIDGMVACAVPVRDADGELLACLFSHAPVIRCSMAQLLEFVPR
LRAAARELEAVLGSAAALDEQR