Protein Info for Psest_3754 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein involved in response to NO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 224 to 241 (18 residues), see Phobius details amino acids 253 to 275 (23 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 318 to 339 (22 residues), see Phobius details amino acids 345 to 367 (23 residues), see Phobius details PF05940: NnrS" amino acids 14 to 366 (353 residues), 190.9 bits, see alignment E=2.3e-60

Best Hits

KEGG orthology group: None (inferred from 79% identity to psa:PST_0520)

Predicted SEED Role

"NnrS protein involved in response to NO" in subsystem Denitrification or Nitrosative stress or Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GS66 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Psest_3754 Uncharacterized protein involved in response to NO (Pseudomonas stutzeri RCH2)
MPPRKPRLPFANAWFFPAAALYAALILPSSVIALLGLIPALPGLVTPAGHAHEMIFGFAL
AVIAGYLLGPQPLRFTLTLLGCWLLARVSFLLWPGSWLALASAALFAAGLAWKVLPRFLG
AAKKWRNQTVAPIVAGLGLLSAAASGGLGATLDRLALLEALLLLATLMFFMGGRIIAPAV
AGYAQSQGRQLAARVQPNLEGAVLILLGLALVLNLLPWSLARQLTGAVLISAGVLTIIRL
LRWQPWHCTRPDLLILLLGYAWLALGLLLFGLGTLLPRLPLNATLHALSVGALGSLTFAV
MARTQLIYRFRDPAAQPWIQAAALLISLAALARVVPALLDQSRPGWLLLAAITWSLAFLA
LTLLLWRCRHAHSDSPRRAADR