Protein Info for Psest_3737 in Pseudomonas stutzeri RCH2
Annotation: Putative threonine efflux protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K05834, homoserine/homoserine lactone efflux protein (inferred from 96% identity to psa:PST_0535)Predicted SEED Role
"Homoserine/homoserine lactone efflux protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0GSC9 at UniProt or InterPro
Protein Sequence (210 amino acids)
>Psest_3737 Putative threonine efflux protein (Pseudomonas stutzeri RCH2) MSLETWLAFFVACWVISLSPGAGAIASMSCGLQYGFWRGYWNAIGLQLALVLQIAVVAAG VGAVLATSELAFGLIKWFGVGYLLWLAWKQWQAQPQALDDSAAPRPIGRPLSLVLRGFVV NASNPKAIVFILAVLPQFLDPQRPLLLQYSEMAATMVVVDLIVMAAYTGLAAKVLRLLRT PRQQRLINRSFAAAFAGAAALLATVRRAVV