Protein Info for PGA1_262p00410 in Phaeobacter inhibens DSM 17395

Annotation: ASPIC and UnbV.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13517: FG-GAP_3" amino acids 55 to 120 (66 residues), 29.6 bits, see alignment E=1.3e-10 amino acids 280 to 354 (75 residues), 27.8 bits, see alignment E=4.9e-10 PF07593: UnbV_ASPIC" amino acids 444 to 517 (74 residues), 65 bits, see alignment E=7.6e-22

Best Hits

KEGG orthology group: None (inferred from 64% identity to sit:TM1040_3172)

Predicted SEED Role

"FG-GAP repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ESK9 at UniProt or InterPro

Protein Sequence (518 amino acids)

>PGA1_262p00410 ASPIC and UnbV. (Phaeobacter inhibens DSM 17395)
MRVRVHRLLAPLCLLPQIALASSSEPPMFTPRPIAAHIYDGGWEHFVGGGLASLDCNDDR
FPDLVAAGGSNPVQLMINRTKTPGAALQFTADTPTALAQTGVTGIYPLDIDGDRVLDLAV
LRVGADQLLRGIGDCQFEPFDDLGFSSGDHWTTAFSATWEKGAQLPTLAFGTYVDRSNPD
GPFEACDDTLLYRPEGDRYSPPIRLTPGYCALSMLFTNWHRRADGPARGRADLRISNDRH
YYVRGGQEQMWKMTTPPELYQQDDGWAPYHLWGMGIASRDLNGDGFSDVYLTSMGDQKLQ
LFDPAGIGPSYRDVTYNYGTTAHRPTSGGDGRPSTGWHADFGDVNNDGRDDIFVTKGNVE
QMPDAAMRDPNTLLIQGVDGRFADAAAAAQIADMARSRGAVLRDLNLDGRLDLAVINRRA
PMELHQNATQTTGNWLTLSVYGIAPNTQAIGAFVELDTGTRIHTRELTVGGGHAGGSAGD
LHFGLGEAQDLRLRVIWPDGEATEWQAVSPNQHITVIQ