Protein Info for Psest_3699 in Pseudomonas stutzeri RCH2

Annotation: Dehydrogenases (flavoproteins)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 PF01494: FAD_binding_3" amino acids 10 to 334 (325 residues), 76.9 bits, see alignment E=5.5e-25 PF12831: FAD_oxidored" amino acids 10 to 172 (163 residues), 33.9 bits, see alignment E=6.9e-12 PF04820: Trp_halogenase" amino acids 10 to 90 (81 residues), 41.6 bits, see alignment E=2.3e-14 amino acids 99 to 371 (273 residues), 44.1 bits, see alignment E=4.1e-15 PF13450: NAD_binding_8" amino acids 13 to 41 (29 residues), 28.1 bits, see alignment (E = 6.3e-10)

Best Hits

KEGG orthology group: None (inferred from 81% identity to pmk:MDS_0616)

Predicted SEED Role

"FIG022199: FAD-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQ90 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Psest_3699 Dehydrogenases (flavoproteins) (Pseudomonas stutzeri RCH2)
MAPLETQHREVVIIGAGPSGAIAGALLKRQGHDVLIIERQRFPRFSIGESLLSHCLDFIE
EAGMLEAVRAAGFQTKHGAAFGWGERYTEFDFRDKFTAGHGSTYQVQRADFDKLLADQAE
LQGVEIRYEEEVTAADFSGAQPWLQIRRADGSEYRVDAAFVLDASGYGRVLPQLLDLEAP
SGFPVRRAIFTHIEDRIDDPRFDREKILITTHPELRDVWYWTIPFSNGRCSLGVVASAER
YEGRPVNLDACLREFVQEAPNLKRILQNAEWDTPARLIGGYSANVKSLHGPGFALLGNAA
EFLDPVFSSGVTIAMRSAHMAAAVLHRQLSGETVDWEREFAAPLKRGVDTFRTYVEGWYD
CSFQDVIYYEHAQPEIRRMISSILAGYAWDEKNPYVAEPKRRLRVLAELCSAGADA