Protein Info for PGA1_c03730 in Phaeobacter inhibens DSM 17395

Annotation: Protein of unknown function (DUF1194).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF06707: DUF1194" amino acids 21 to 217 (197 residues), 229.3 bits, see alignment E=4.3e-72 PF13519: VWA_2" amino acids 26 to 141 (116 residues), 27.3 bits, see alignment E=7.1e-10 PF00092: VWA" amino acids 26 to 173 (148 residues), 32.1 bits, see alignment E=2.1e-11

Best Hits

KEGG orthology group: K07114, uncharacterized protein (inferred from 64% identity to sil:SPO0357)

Predicted SEED Role

"von Willebrand factor type A domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ETS3 at UniProt or InterPro

Protein Sequence (229 amino acids)

>PGA1_c03730 Protein of unknown function (DUF1194). (Phaeobacter inhibens DSM 17395)
MRIFRLLVFMLVVQVPIPARACDLALVLAVDVSGSVDVEEYRTQMEGLAAALQDGVVAEA
LVRAQARVALIQWSGSGRQELTLSWRHASDFQALDQLAADIAAASRPWRNYATGIGEALQ
LAIEQFQTVPGCRRRVIDVSGDGPSNEGVEPTAIRGALSAAGITVNALAIEESEPDLTAY
FFEQVIHGAGAFVQTAAGFEDYPQAIRKKLLREVAQQNAGLSSFHPAIP