Protein Info for Psest_3674 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 PF04293: SpoVR" amino acids 11 to 430 (420 residues), 610.6 bits, see alignment E=1.2e-187 PF24755: YcgB" amino acids 434 to 485 (52 residues), 91.9 bits, see alignment 2e-30

Best Hits

Swiss-Prot: 68% identical to YCGB_ECOLI: Uncharacterized protein YcgB (ycgB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to psa:PST_0720)

Predicted SEED Role

"FIG004684: SpoVR-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQT8 at UniProt or InterPro

Protein Sequence (515 amino acids)

>Psest_3674 Uncharacterized conserved protein (Pseudomonas stutzeri RCH2)
MKRQPISTGSEWTFDLIRQYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASVGMPLG
YHHWSYGKQFLHTEKHYKRGQMGLAYEIVINSDPCIAYLMEENTMCMQALVIAHASYGHN
SFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEERHGIDAVEDLLDSCHALMNYGVDRYK
RPYPISAEEERRRQKDREEHLQRQINDLWRTIPKGADKGDGQADSQRFPAEPQENILYFI
EKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLLNDLYDEGLVTDGF
MMEFLQSHTSVIYQPGFDSPYYSGINPYTLGFAMYQDIRRICEHPTEEDKRWFPDIAGSD
WLTTVKFAMNNFKDESFILQFLSPKVIRDLKLFSILDDDRKDELLVPAIHDESGYHTIRE
LLAAQYNLGNREPNVQVWNVDRRGDRSLTLRHTQHDRKPLGGSTEEVLKHLHRLWGFDVH
LQSIQDDKLVNTHHMPPRPSSEPEADSRFPGMNFA