Protein Info for Psest_0036 in Pseudomonas stutzeri RCH2

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 39 to 60 (22 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details PF15420: Abhydrolase_9_N" amino acids 30 to 236 (207 residues), 225.6 bits, see alignment E=7e-71 PF10081: Abhydrolase_9" amino acids 253 to 541 (289 residues), 405.2 bits, see alignment E=1.4e-125

Best Hits

KEGG orthology group: None (inferred from 89% identity to psa:PST_0033)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GH52 at UniProt or InterPro

Protein Sequence (567 amino acids)

>Psest_0036 Predicted membrane protein (Pseudomonas stutzeri RCH2)
MLRLPLLSAWRSLSGFGLLLGTLFFCAALKPSLVPRSTLSQGVLAGAALAVGYGIGVLWR
WLWRYLGLPERPEHLRERVNLLIAAVCVPLAGFFLSQVAGWQNAVRALMGMEPVSSAHLI
EVVLTALATFLILLTLARLYRLVSRFVSRHADRILPRRVANVIGVLVALALFWSLATDVL
VAQALRALDASFAQYDALIEPETAPPASPLKSGSAASTLRWEELGRTGRGFIGSGPSAAE
ISAVSGEPALEPIRVYVGLRAAETPRQRARLALSELQRSGAFERSVLVVVAPTGTGWIDP
AAMNTVEYLHHGDIASVALQYSYLNSPLALLVEADYGRDVARALFAEIYAYWTRLPPERR
PRLYLHGLSLGALHSQRSWELHELLGDPIHGALWSGPPFRSDLWRSLTDSRNEGSPEWRP
QFRDGRFVRFMNQQGTPEPADAPWGPMRLLYLQYASDPITFFDHRYAWRRPDWLAEPRGP
DVSPSLRWFPLVTMLQLAVDMAVTTPTPPGYGHVYAPADYVDAWRIVSAPAGWSDAALQR
LKQHLAHELARASEEDSEEAAYGNRGG