Protein Info for PGA1_c03690 in Phaeobacter inhibens DSM 17395

Annotation: putative NnrU protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 66 to 81 (16 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details PF07298: NnrU" amino acids 4 to 176 (173 residues), 147.7 bits, see alignment E=1.5e-47

Best Hits

KEGG orthology group: None (inferred from 70% identity to sit:TM1040_3521)

Predicted SEED Role

"NnrU family protein in cluster with Mesaconyl-CoA hydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EIY0 at UniProt or InterPro

Protein Sequence (182 amino acids)

>PGA1_c03690 putative NnrU protein (Phaeobacter inhibens DSM 17395)
MALLLLGILIWWGAHFFKRLAPDARAALGDRGKGLIALILLASVVLMVIGYRSAESFDLA
LPPPFFTHINNTLMLLALYFTSPGPSKGALFYKLRHPMLLGVAMWAVAHLLVNWDPASFV
LFGSMLIWTLAEMIVINRAEPIWTANPKGRLVKDGMFFVASIVLLGVIGYVHGLVGPSPF
PG