Protein Info for PGA1_c36070 in Phaeobacter inhibens DSM 17395

Annotation: undecaprenyl-diphosphatase UppP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 117 to 133 (17 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 187 to 209 (23 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 250 to 267 (18 residues), see Phobius details PF02673: BacA" amino acids 7 to 260 (254 residues), 235.4 bits, see alignment E=4.5e-74

Best Hits

Swiss-Prot: 81% identical to UPPP_RUEST: Undecaprenyl-diphosphatase (uppP) from Ruegeria sp. (strain TM1040)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 81% identity to sit:TM1040_2821)

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F449 at UniProt or InterPro

Protein Sequence (268 amino acids)

>PGA1_c36070 undecaprenyl-diphosphatase UppP (Phaeobacter inhibens DSM 17395)
MPLYQLILIALIQGITEFLPVSSSGHLILLPGLTGLEDQGQIIDVAVHVGTLAAVMLFFW
QDVRAGLIGLPRALTGRLDTPGARLAMGLIVATIPTVLFGGFLHFSGMSDALRSMKVIGW
TMLGFGLVLYVADRYGPAHKESSDWNLRDALIMGLWQMLALIPGTSRSGITITGARQLGY
TRMDAARLSMLMSIPTIIASGVLLGAEVAIDANTAVMRDAAIAALLSMIAALAALTLMMR
LLRSVSFTPYVIYRVALGVVLLTIAYQG