Protein Info for PGA1_c35650 in Phaeobacter inhibens DSM 17395

Annotation: putative flagellar basal body-associated protein FliL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 transmembrane" amino acids 19 to 40 (22 residues), see Phobius details PF03748: FliL" amino acids 79 to 172 (94 residues), 50.6 bits, see alignment E=1.3e-17

Best Hits

KEGG orthology group: K02415, flagellar FliL protein (inferred from 79% identity to sit:TM1040_2948)

Predicted SEED Role

"flagellar basal body-associated protein FliL"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F412 at UniProt or InterPro

Protein Sequence (174 amino acids)

>PGA1_c35650 putative flagellar basal body-associated protein FliL (Phaeobacter inhibens DSM 17395)
MTDAVVDTEQDAPAKKSKLPLIIGVVLALVGAGGGFFAVQSGLLPFGQSAAPEGVDATEV
APEGVDNGESAEDIANLAFIEMEPIVITLRKASGLKHLRFRSQLEVDLAHRAEVEKILPR
VVDVLNSYLRALELEDLTDPMALPKLRAQMLRRINIAAGQGRVRDLLIMDFVLN