Protein Info for Psest_0035 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 203 to 230 (28 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 464 to 484 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 85% identity to psa:PST_0032)

Predicted SEED Role

"Optional hypothetical component of the B12 transporter BtuN" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GD52 at UniProt or InterPro

Protein Sequence (508 amino acids)

>Psest_0035 hypothetical protein (Pseudomonas stutzeri RCH2)
MKRYLYLAHRWLGIGLGLFVLLWIVSGVVMLFVAYPKLTPEEHLSRLQPLSVDCCIAPGA
ALAASKVPRTPLSLRLTGAGGSPRYLLDYGDGPLLAVDARSGKRIEHIGAAEALASARQF
ADGAEVRLLDRVEEDAWTRNHALARERPLYRVQADDAEGRLLYVSSHSGLVVRDATAHER
AWNLLGAWLHWLYPLREVMPKTLWSVALVYGALLAAVLVLLGMLIGLMRWRFAGRYRNGS
HSPYPVGAGRLHHVGGLLIGVVLLVWLGSGMLSMEPWGLFEKRSTIDAAALRQAPLLNAE
ALDTDLAAALARLRQAGIEPVELQWHVLGDQPYLLGIDAGGETRILPATHSEPAQERLER
ALLEREVRQAWPEQQLRFEWLEREDFHYYARSEPSLYSHLPRRLPLLRVRFDDPAATWLH
LDPYSGTVIEQLDQRRRAVRWVFKLLHSWDWLPLLQRPLLRDGLLLAFSAGMLLIAISGV
LLGWRRLRGRPRRARERTARAAQPPRLP