Protein Info for Psest_3562 in Pseudomonas stutzeri RCH2

Annotation: ABC-type antimicrobial peptide transport system, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00005: ABC_tran" amino acids 26 to 179 (154 residues), 97.9 bits, see alignment E=7.7e-32

Best Hits

Swiss-Prot: 39% identical to LOLD_CHRVO: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)

KEGG orthology group: K02003, (no description) (inferred from 95% identity to psa:PST_0826)

Predicted SEED Role

"SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)" (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPZ2 at UniProt or InterPro

Protein Sequence (235 amino acids)

>Psest_3562 ABC-type antimicrobial peptide transport system, ATPase component (Pseudomonas stutzeri RCH2)
MTAPLLAIDSLGFAWPRQAELLDIPTFRLERGESLFLKGPSGSGKTTLLGLIGGVQKAGR
GSIRLLDHDLGRLSAGARDRFRVDHTGYIFQQFNLLPFLSVRENVGLPCHFSRLRAERAR
KRHGSTDAAAASLLEHLGLSPELFERRADALSIGQQQRVAAARALIGQPELVIADEPTSA
LDADSREAFLHLLFSECRAAGASLLFVSHDQSLAPLFDRSLSLAELNRAASNPEL