Protein Info for PGA1_c35320 in Phaeobacter inhibens DSM 17395

Annotation: double strand break repair protein AddB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 977 TIGR02786: double-strand break repair protein AddB" amino acids 10 to 966 (957 residues), 978.1 bits, see alignment E=3.1e-298 PF12705: PDDEXK_1" amino acids 710 to 917 (208 residues), 60.1 bits, see alignment E=1.7e-20

Best Hits

KEGG orthology group: None (inferred from 74% identity to sit:TM1040_2845)

Predicted SEED Role

"FIG041266: ATP-dependent nuclease subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ES33 at UniProt or InterPro

Protein Sequence (977 amino acids)

>PGA1_c35320 double strand break repair protein AddB (Phaeobacter inhibens DSM 17395)
MRFEPQDTPRLFAVPCGVDFPRALVDGLVARSENTSPEELAKVEFIVNTSRMARRVRDLF
DQGPALLLPRISLLSDLDMRATLRGLPPALPPLRRRLELSQLIAKLLEAQPDLAARSSLY
DLSDSLAALFDEMQGEGVSPETIRSLDVSDMSGHWARAQQFIAIADEFAETHEHAMDAQA
RQRQVVLDLIEEWQDSPPQHPVILAGSTGSRGTTLMLMEAIARLPQGAVILPGFDDQQPG
HVWEHLDDPLMSEDHPQYRFFKIMRDLDMTPDQVRPWVDAIPASMARNRLVSLALRPAPV
TDAWMREGPELRDIDQATADVSLVEAPNPRAEALAIALRLRKAAEDGQTAALITPDRMLT
RQVAAALDRWDILPDDSAGQPLQLSPPGRFLRHIAELFCKPLACDTLLTLLKHPLCHDGA
GRGDHLRHTRELELRLRRYGPPFPDPDSFAAFEIGRELMPGWTAWLTQCFADKPISGTQP
LSQWVDALRNLAEAISRGSQNAADGGLWDKKAGRKALEIVNNLQAEAGYGGQMTARDFAD
LLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPEAATPDPWLNRQ
LRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRSERSDEADTVPSRWLNRMTNLLSGLP
GQGGPAALADMRARGQEWLGWAEVLEAPTSLPPAKRPAPRPPVAARPRRLTITEIPRLIR
DPYAIYAKHVLKLRPLDPLVQEPDALLRGIVLHKILEDFIKASVTDPKRLTVPDFLTTAT
AHLEAKVPWPVARSLWLARLERIAEDFITGEQQRQAIAQPSGFEVSGTVRVAPLDFEIAG
TADRIDVDERGGLHLFDYKTGDPPTESQQKTFEKQLLIEAAMAERGAFERYGEGRVERAL
FLGLKSPLKEVAAPLLDEPPSKVWEELTKLISAYFEPDQGYSSRRMVFQDTQTGDYDHLA
RYGEWDRSDPPVSEILT