Protein Info for PGA1_c35060 in Phaeobacter inhibens DSM 17395

Annotation: inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 31 to 35 (5 residues), see Phobius details amino acids 78 to 92 (15 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details PF04304: DUF454" amino acids 2 to 115 (114 residues), 130.9 bits, see alignment E=1.1e-42

Best Hits

KEGG orthology group: K09790, hypothetical protein (inferred from 73% identity to sil:SPO0005)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F1L6 at UniProt or InterPro

Protein Sequence (117 amino acids)

>PGA1_c35060 inner membrane protein (Phaeobacter inhibens DSM 17395)
MRLLYAALGLLCVGLALVGVALPLLPTVPFLLLASFFFANSSERLHDWILNHRLFGTMIQ
DWHERGAIRPAAKKAATFSVAAVFGLSVILSAPSHVLIIQAITLSAVMIFIWSRPNG