Protein Info for PGA1_c35050 in Phaeobacter inhibens DSM 17395

Annotation: oxygen-independent coproporphyrinogen III oxidase HemN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 TIGR00539: putative oxygen-independent coproporphyrinogen III oxidase" amino acids 11 to 354 (344 residues), 287.6 bits, see alignment E=7.4e-90 PF04055: Radical_SAM" amino acids 12 to 172 (161 residues), 73.9 bits, see alignment E=1.8e-24 PF06969: HemN_C" amino acids 310 to 372 (63 residues), 41.8 bits, see alignment E=9.2e-15

Best Hits

KEGG orthology group: K02495, oxygen-independent coproporphyrinogen III oxidase [EC: 1.3.99.22] (inferred from 73% identity to sit:TM1040_2870)

Predicted SEED Role

"Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB" in subsystem Heat shock dnaK gene cluster extended or Heme and Siroheme Biosynthesis or Queuosine-Archaeosine Biosynthesis

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.22

Use Curated BLAST to search for 1.3.99.22

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DVQ3 at UniProt or InterPro

Protein Sequence (384 amino acids)

>PGA1_c35050 oxygen-independent coproporphyrinogen III oxidase HemN (Phaeobacter inhibens DSM 17395)
MDDWRNGGFGLYVHWPFCQAKCPYCDFNSHVTAQIDQTRWAAAYRAEMLRAAPALSGRVL
NTIFFGGGTPSLMHPDTVATIIETAREIWPFSNDIEISLEANPTSVEAGRFTGYRDAGVN
RISMGIQALNDGDLHRLGRMHSVSEAQNAFDVARKCFDRVSFDLIYARQGQTLVGWQQEL
DQALSMAIDHLSLYQLTIEEGTAFGDRYARGKLRDLPSDDNAADMYLTTQEICDKHGLPA
YEVSNHARPGAESRHNLIYWRYGDYLGIGPGAHGRLTLDGTRYATETYLQPGAWLAAAEN
HTGECSRIPLTPEDASAEYLMMGMRLVEGLDLDRFRAISGRTLSSERISNLREIGMVELS
DNRIQATDAGRAVLNAVLRDLLVE