Protein Info for PGA1_c03560 in Phaeobacter inhibens DSM 17395

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 59 to 75 (17 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details PF01124: MAPEG" amino acids 8 to 128 (121 residues), 92.2 bits, see alignment E=1.5e-30

Best Hits

KEGG orthology group: None (inferred from 64% identity to rde:RD1_1605)

Predicted SEED Role

"inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EW97 at UniProt or InterPro

Protein Sequence (129 amino acids)

>PGA1_c03560 Predicted membrane protein (Phaeobacter inhibens DSM 17395)
MTAELTALTLAALLQALQFCAYAITANRQLDPKIALGPRDTPVTLTGTAGRFKRAMENHF
EGLILFTIACGVVVISDQSTGFTAGCAWVYLCARVLYVPAYVLGWTPGRSIIWFVGFFAT
VFMLTAALV