Protein Info for HP15_3378 in Marinobacter adhaerens HP15

Annotation: VanZ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 49 to 66 (18 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details PF04892: VanZ" amino acids 43 to 115 (73 residues), 36.5 bits, see alignment E=3.6e-13

Best Hits

KEGG orthology group: None (inferred from 61% identity to maq:Maqu_3617)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PRP5 at UniProt or InterPro

Protein Sequence (134 amino acids)

>HP15_3378 VanZ family protein (Marinobacter adhaerens HP15)
MDTLKQQLTSLLQFRPLWQAAFVVSVLAIGFLATTDSPHAIPSSSNDKVNHLIAFLELTI
LTRLAWPELRPIWFAPALLGFGLGIELIQATLPYREFSLADLAADGAGIAIGLLPWPGIR
NTGKPDLRNSPESL