Protein Info for Psest_3497 in Pseudomonas stutzeri RCH2

Annotation: Predicted metalloprotease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details PF04228: Zn_peptidase" amino acids 1 to 280 (280 residues), 400.8 bits, see alignment E=2e-124

Best Hits

KEGG orthology group: K07054, (no description) (inferred from 95% identity to psa:PST_0886)

Predicted SEED Role

"Metallopeptidase, zinc binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPT8 at UniProt or InterPro

Protein Sequence (285 amino acids)

>Psest_3497 Predicted metalloprotease (Pseudomonas stutzeri RCH2)
MRWNRARRSDNVVDARGRSGMRLGGGLGLGGIAIVVIIGLLSGQDPLQILGQLASQSGPP
VTQQSQRPAGDDPQTEFVRAILGDTEDTWRALFQQHGTQYRDPTLVLFRGGVNSACGFAS
SAVGPFYCPGDQQVYLDLQFFDEMAQRFSASGDFAQAYVIAHEVGHHVQTLLGVSQQMQA
ARQRGAKMEGDNGLLVRQELQADCFAGVWAYHAQQRHDWLEEGDLEEALNAANAIGDDNL
QKRSQGRVVPDAFTHGTSAQRVRWFRDGFEHGDPTRCDTFKAARL