Protein Info for Psest_3469 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 38 to 39 (2 residues), see Phobius details PF06977: SdiA-regulated" amino acids 62 to 313 (252 residues), 308.6 bits, see alignment E=4.2e-96 PF13449: Phytase-like" amino acids 120 to 200 (81 residues), 31.9 bits, see alignment E=2e-11

Best Hits

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMH5 at UniProt or InterPro

Protein Sequence (317 amino acids)

>Psest_3469 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MMQTSFYSSHRLGALLRRRYGLLGLLVLLSACVVTAVALHWNERLYFNLTQLINVTGQDV
TNRWLPGYAVVIDGKPVRGISQNLSAVSYDADLDRLLAVVNGGPTELVALSKTGELLERY
PLQGFGDIEGVTYMGHGRVAVSDERAQQISIFRLPAQPRPIEASEAQFFSLGINLNGNKG
FEGLTYDAAGDRLFIVKERDPRQLYEVGGVAASLEGPLQLTIRDRSDWIADQVFATDLSD
IHFDAATGHLILLSDESRLLMELSDSGRMLSYRSLNRWFGGLQRSAPHPEGVTIDNDGTL
FVVSEPNLFYSFRRAEG