Protein Info for Psest_3467 in Pseudomonas stutzeri RCH2

Annotation: PAP2 (acid phosphatase) superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 209 to 228 (20 residues), see Phobius details PF01569: PAP2" amino acids 100 to 230 (131 residues), 65.9 bits, see alignment E=1.7e-22

Best Hits

KEGG orthology group: None (inferred from 77% identity to pmk:MDS_2292)

Predicted SEED Role

"PAP2 superfamily protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPN6 at UniProt or InterPro

Protein Sequence (245 amino acids)

>Psest_3467 PAP2 (acid phosphatase) superfamily protein (Pseudomonas stutzeri RCH2)
MNPPNQIPHSRPFNFTLGFGLPALLMAALLFGDPSNLDFALSRQFYEPGIGFVGRHSWLL
EDFLHDRVKQLVIVIGVLAIAGFLLSLLPTRLAPWRRSLGYLVLALGLSTSIVTPLKTLT
GVHCPWSLAEFGGAETFTPLLSERAPALKPGRCWPGGHASAGFSLLALFFVLRDRRPRTA
RIALAVALGLGTVLSVGRVMQGAHFFSHNLWTLLFDWTICLACYRLVLYRAVPAMPPLLA
EQPAR