Protein Info for Psest_3454 in Pseudomonas stutzeri RCH2

Annotation: Adenylate cyclase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF09086: DUF1924" amino acids 38 to 130 (93 residues), 134.4 bits, see alignment E=7.2e-44

Best Hits

Swiss-Prot: 45% identical to SHP_RHOS4: Cytochrome c-type protein SHP (shp) from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

KEGG orthology group: None (inferred from 54% identity to meh:M301_0065)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMF6 at UniProt or InterPro

Protein Sequence (134 amino acids)

>Psest_3454 Adenylate cyclase (Pseudomonas stutzeri RCH2)
MKTHWIVLACCLSLPALAETEHPLLPGYAAQARQENPAFAGFSAERGQALYVAEEQRSGK
TMSCTSCHTTDPRQAGKTPAQRKVDPLAPVANPKRFTDLAKVEKWFRRNCDDVFARECTA
QEKGDFISWITGLK