Protein Info for PGA1_c34270 in Phaeobacter inhibens DSM 17395

Annotation: putative integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 209 to 231 (23 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details PF00892: EamA" amino acids 5 to 137 (133 residues), 73.9 bits, see alignment E=7.2e-25 amino acids 148 to 281 (134 residues), 47.3 bits, see alignment E=1.2e-16

Best Hits

KEGG orthology group: None (inferred from 78% identity to sil:SPO3743)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ERS6 at UniProt or InterPro

Protein Sequence (294 amino acids)

>PGA1_c34270 putative integral membrane protein (Phaeobacter inhibens DSM 17395)
MDLRALAMGLAFAFMWSSAFTSARIIVADASPLYSLAFRFLISGLIGVAVARYMGQSWRL
TRGQLKATVIFGICQNALYLGLNFVAMETIEASLAAIIASTMPMLVAIALWLVYGERLPR
LGVVGLLAGVLGVALIMGTRISAGVDLFGVLLCGIGVLALTLATLALRGATSGGNYMMVV
GLQMLIGSAVLFVVAPMVETFRLTPSWPLALAFVYTTLVPGLTATFIWVLLLNRIGAVRA
ATFHFLNPVFGVAVASVLLGEQLGLLDIVGVGIVTFGILAVQLARQSAQRTPKP