Protein Info for Psest_3436 in Pseudomonas stutzeri RCH2

Annotation: Domain of unknown function (DUF1987).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 PF09345: SiaC" amino acids 6 to 123 (118 residues), 138.3 bits, see alignment E=5.1e-45

Best Hits

Swiss-Prot: 71% identical to Y213_PSEAB: Uncharacterized protein PA14_02130 (PA14_02130) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: None (inferred from 91% identity to psa:PST_0936)

Predicted SEED Role

"FIG057251: Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRB7 at UniProt or InterPro

Protein Sequence (125 amino acids)

>Psest_3436 Domain of unknown function (DUF1987). (Pseudomonas stutzeri RCH2)
MNDFSIPGSQSTPAIHSDWEKGVVSMQGDSYPENSYELFHQVYDWIERFLGQASHPLALE
LRLLYLNTSSIKAMMDIFDLLEAAYQDGRQVAVNWYYDIRNERVVELAEEFKEDCTFPFS
ILSHD