Protein Info for PGA1_c03480 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 937 transmembrane" amino acids 78 to 98 (21 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details PF13779: DUF4175" amino acids 58 to 937 (880 residues), 895 bits, see alignment E=2.4e-273

Best Hits

KEGG orthology group: None (inferred from 64% identity to sit:TM1040_3496)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ETQ6 at UniProt or InterPro

Protein Sequence (937 amino acids)

>PGA1_c03480 hypothetical protein (Phaeobacter inhibens DSM 17395)
MVNTPKFRRKADDIPAAAPGSLGRGKADVGQPSGAGGSDAVPDSASSGLQFSDPRLARLR
WPLRLTWLGLLSERLVRAYWPLLSLVMLALAAMMLGLHEQLPVELVWVGAVVLVLATVAA
LGFGGWRFTRPRLSDALARLDATVPGHPIAAVLDAQAIGSDDPASQALWQAHQQRMQARA
AAAKAPKPNLSVARADPFALRYLAMLALAVALLFGSIWRVGTLGEMTPGAVAAATGPTWE
GWIEPPRYTGLPVLYLNDQTETALSLPENSRLTLRFYGEVGDLTLDETISGRVGDLPSAA
AAEQSFDITRDGTLAINGAGGRSWDVTLLKDRPPSVGIIGDPTLESDDTTSLAYTASDDY
GVAGGQVEIALDMEALDRRHGLAVTPDALDPIVLDLPLPLSGDRRAFDEQMIETFAKHPW
ANMPVTYRMLAQDAAGQEAHAEPLNAPLVTRRFFDPMAAAVAEQRRDLLWARANAPRVAQ
ILRTLSTYPAEVFRDHGDYLRLRTILRRLEQHSTAGTLGPDQQDDLADALWDLAIQLEEG
DVGDALARMERAQEQLSQAMRDGASEEEIARLMQQLRDATQDYLRQLQRQAQEQGNQGEQ
QGAPDENAMQLTQQDLQAMMDRIQELMEQGRMAEAEQALREFQQMMENMRVTEGQQGQDG
SPGEQSMDGLADTLREQQGLSDQAFRDLQEQFNPGARRGESDGNEGRNGGLGRGQSHEGG
QGNQGGQGDRPGAGNPGGERQPGQGGQGQRAPDAEGGQGGDDATQPGGGRGLGSSLADRQ
QALRDQLRAQREGLPLGNGEGDQATRDALDDAGRAMDGAEEALRQGDLAEAIDRQSDAME
ALREGMRALGEAMAEQQQPGQQQGQGRASTSAQGNRMDPLGRRNGEQGDGGVSDGQFSEG
QAYRRAWDLLEEIRRRAGERSRSETERSYLERLLDRF