Protein Info for Psest_3425 in Pseudomonas stutzeri RCH2

Annotation: Sortase and related acyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 PF00583: Acetyltransf_1" amino acids 83 to 181 (99 residues), 59.8 bits, see alignment E=4.6e-20 PF13673: Acetyltransf_10" amino acids 87 to 181 (95 residues), 25.8 bits, see alignment E=1.4e-09 PF13508: Acetyltransf_7" amino acids 99 to 181 (83 residues), 37.1 bits, see alignment E=5.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRA6 at UniProt or InterPro

Protein Sequence (215 amino acids)

>Psest_3425 Sortase and related acyltransferases (Pseudomonas stutzeri RCH2)
MGKSQRHGRLPLTNPSIATPFRLRLRLHYKAARVGGVMRIHREGTLIIEIRKAEKADVPA
ILDLVRGKAEFDGCLNSLQSTEADIEEAFFSEQPKAFALLAMKSGEAVGIATYYSIYSTF
IAKPGIWLDDLFVYPQFRGSGVGEALLSELCILAQNTGCGRIDWIVATDNDRGRSFYERS
GARIFEEVRRARLDECAINALAEKAHNKAMHPTSG