Protein Info for Psest_3394 in Pseudomonas stutzeri RCH2

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 162 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 1 to 161 (161 residues), 230.8 bits, see alignment E=5.7e-73 PF03350: UPF0114" amino acids 9 to 125 (117 residues), 123 bits, see alignment E=4e-40

Best Hits

Swiss-Prot: 99% identical to Y950_PSEU5: UPF0114 protein PST_0950 (PST_0950) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: None (inferred from 99% identity to psa:PST_0950)

Predicted SEED Role

"Putative inner membrane protein (Fragment)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRE0 at UniProt or InterPro

Protein Sequence (162 amino acids)

>Psest_3394 TIGR00645 family protein (Pseudomonas stutzeri RCH2)
MERILENAMYAARWLLAPIYFGLAFALLALAIKFFQEIFHILPMILSISEADLVLTLLSL
IDMALVGGLLVMVMISGYENFVSQLDVAEGKEKLDWLGKMDSSSLKLKVAASIVAISSIH
LLRMFMDVQQIDSDKLMWYVIIHLTFVVSAFAMGYMDKITKH