Protein Info for Psest_3337 in Pseudomonas stutzeri RCH2

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 34 to 57 (24 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 127 to 151 (25 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 285 to 311 (27 residues), see Phobius details PF03547: Mem_trans" amino acids 13 to 129 (117 residues), 33.5 bits, see alignment E=9.1e-13 amino acids 162 to 300 (139 residues), 47.3 bits, see alignment E=5.8e-17

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 92% identity to psa:PST_1005)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPV6 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Psest_3337 Predicted permeases (Pseudomonas stutzeri RCH2)
MFSLVLQTLSVTAPVFAMLFLGVALMRLRWIDSAFVHTASSLVFKGTMPTLLFISIIKAD
LSAALQPALLLYFVLATVATFALAWLWALWRCPAPDRGVYVQGAFRGNNGIVGLALASSL
YGDYGLSLGGVLAGVVILVYNSLSAVVLAIYSPDGRVGPKDILLSILRNPLIIGVVAAVP
FAYWQVALPGWLMTSGQYFAQMTLPLALICIGATLSLDALRKSSGSALSSSLMKMVWLPA
LATLGAWACGFRGAELGILFLYFASPTAAASFVMARAVNSNHQLAATIIVITTLMAALSI
NAGLFLLGWLGWI