Protein Info for Psest_3322 in Pseudomonas stutzeri RCH2

Annotation: TIGR02099 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1267 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 1211 to 1230 (20 residues), see Phobius details PF13116: YhdP" amino acids 8 to 1257 (1250 residues), 777 bits, see alignment E=2.1e-237 TIGR02099: TIGR02099 family protein" amino acids 10 to 1266 (1257 residues), 1021.9 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 82% identity to psa:PST_1021)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GM30 at UniProt or InterPro

Protein Sequence (1267 amino acids)

>Psest_3322 TIGR02099 family protein (Pseudomonas stutzeri RCH2)
MSRLAAFLVILSRQLFWLAAFGLILAALYVSLGRQLVPLVAEYRNEVQEKAQAALNMPVT
LGRLEGRWEGFAPKLLAHDVLLGEGDGAMRLDRVAIVPDLAASLWVRGLRLATLELAGVH
LSVAEDAGGKWRVEGLPERTEQPPPDPQKLIEALQQVRRLAVLDSQITLEPFGESPLTLS
YTDLGLRVDNERLRLDARSILPDGQPLALRVQGRVQAQRWQQAEAQLYLSLPQSDWAAWL
PRRLTADWNLHSVQAGGELWARWSKQQLERAVLRLNAPQLNASFADRAPVQLEDLAVEAY
VDHTEKGYRLLLDRLAFDLQGERWGDARILLQQNQGEQHWRLQADRLGIAPIATLVGGLA
PLPPAATETLSTLQPSGTVRNLRLDYHPAMDSPQRLRFAANLDRINFAAQNWIPAVGNAS
GSIQGDLAGGELRLDSDDFSLHLAPLYPEPWHYRHGAGRLTWTLDDRAFTLAAPYLRVDG
EEGKIAGDFLIRLMRDPEAEDYMDLRVGLSDGDAGYTEKYLPTKSPALSPALVDWLKAAI
RGGTVEQGYFQYQGALSKNASDSARSLSLYFKVRDAELAFQPGWPVLRQGRGEVLIEDSG
VRVRLAEGRILDSRVYDATADIPHAGSGKVPQLSVKGKVSSSLPDALKLLQEAPIGTGEI
FAGWQGQGQLDGALDLQIPLGKGTPRVIVDFSSRDATLRIAEPALGFEQLRGDFRYDTAQ
GLSADDIQARLFGRPVRGKAVATGSPGKPASRVEARGDVGLKQLLKWLEVEQPLPASGEL
PYQLRLDLAGENSQLQIDSSLQGLRIELPAPFGKTAGVRRATSLRMSLQGAERRYGVQYG
TLAALAFAAPPGAWAQGRGELRLGAGAANLPARTGLYVRGRLAELDWKAWQAVLDQHGKG
DPQQATGSLLRQVQVDVGRFDGFGTRIDNLGVDLQRLSNAWALNLRSSLISGAVRLPDAE
SGVIVANLQHLRLPAATATGEAAGARPDPLADVDPQSLPAMDVSIDQVAMGDDTLGAWAL
KLRPVSGGVEFRDIALDLKGLRIAGVGGWNGTQTWYKGRLEGRNLADVLLAWGFAPSVTS
ETFRLDADGQWPGSPAWFAMARYSGSMQPRLRKGQFVEIDGSAQALRVFGVLNFNSIGRR
LRLDFSDLFSKGLSYDRLDGNLQASSGVFTTREPITVSGPSSNLELDGKLDMARDEIDAK
LLVTLPISNNLPLAALIVGAPAIGGALFVADKLLGDRVARFASVQYDVKGPWQSPKISFD
KPFEKPN