Protein Info for PGA1_c33095 in Phaeobacter inhibens DSM 17395

Annotation: Lysophospholipase L1 and related esterases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 PF00657: Lipase_GDSL" amino acids 28 to 203 (176 residues), 37.8 bits, see alignment E=2.3e-13 PF13472: Lipase_GDSL_2" amino acids 30 to 199 (170 residues), 66.6 bits, see alignment E=4.4e-22

Best Hits

Predicted SEED Role

"GDSL-like lipase/acylhydrolase" in subsystem Serine-glyoxylate cycle

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E542 at UniProt or InterPro

Protein Sequence (275 amino acids)

>PGA1_c33095 Lysophospholipase L1 and related esterases (Phaeobacter inhibens DSM 17395)
MRRRALRLPEPWGPRFGQLGRGTPLRLLIVGDSSAAGVGVGRQDDALCGQLTKKLTTGRH
LTWRLEATTGHRSADALARVRALPPQTFDVAVLALGVNDVTRLARRRRFHMEQSALIRLL
RDRFGVTLVILSGVPPMADFPALPNPLAWVLGRHSTRLDRVLAKLAAQDPNVVHLPFTIP
PDPTLAAQDGYHPSAMAYTLWADTLAQTINAELSAPCNPSGATHLAQQRNGIDHQREPDH
RESDHPRATELLAKDKDRSQKDHGGRDILQNADRR