Protein Info for PGA1_c32870 in Phaeobacter inhibens DSM 17395
Annotation: putative heparinase II/III-like protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 76% identity to sit:TM1040_0090)Predicted SEED Role
"Heparinase II/III-like"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I7F3E7 at UniProt or InterPro
Protein Sequence (580 amino acids)
>PGA1_c32870 putative heparinase II/III-like protein (Phaeobacter inhibens DSM 17395) MSRYDRMARRGTRLLNRYYARRSRRQPGATAFVSQPEPRTIGSFARGRQLVAGNLLFAGY LVESPTTALWDVVAPDLAFDAERHGFAWLDDLAAVGDFRAREKAQLWVWGWIDTHGNGSG PGWSPDLTGRRVIRWINHALFLLAARTADQSEAFFGALSRQTWFLSRRWQGASPGLPRFE ALTGLIYAGLALKGHEDQVDPALKALAEECASQIDEQGGLPTRNPEELLEVFTLLTWAAA ALQDAGRGVPPAQLAAIERIAPTLRTLRHADGGLARFHGGGRGLEGRLDHALAASHVTTR HADGLAMGYARLSGRRTSVIIDASVPPKGRASWNGHASTLAFELTSGRRPLIVNCGSGET FGVEWRRAGRATPSHSTLCIEGHSSARLAPPERGSGHEIMTEAPDNVPLDLSDLEDGYRF QGGHNGYERHFGLTHARTLELAVDGRGLAGEDMLLALDTRNKRRFDKAMDAHSLGGIGFE IRLHLHPDVDAALDLGGAAVSMALKSGEIWVFRHDGTCELKLEPSVYLEKTRLKPRAAKQ IVLSGRAMNYATRIRWTLSKAQETAVAVRDLNRDDPELTD