Protein Info for Psest_3291 in Pseudomonas stutzeri RCH2

Annotation: Lipid A core - O-antigen ligase and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 141 to 166 (26 residues), see Phobius details amino acids 186 to 203 (18 residues), see Phobius details amino acids 218 to 252 (35 residues), see Phobius details amino acids 258 to 284 (27 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 376 to 393 (18 residues), see Phobius details amino acids 399 to 416 (18 residues), see Phobius details amino acids 436 to 457 (22 residues), see Phobius details PF04932: Wzy_C" amino acids 220 to 356 (137 residues), 53.3 bits, see alignment E=1.4e-18

Best Hits

Predicted SEED Role

"Phosphatidate cytidylyltransferase (EC 2.7.7.41)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 2.7.7.41)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.41

Use Curated BLAST to search for 2.7.7.41

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPR0 at UniProt or InterPro

Protein Sequence (485 amino acids)

>Psest_3291 Lipid A core - O-antigen ligase and related enzymes (Pseudomonas stutzeri RCH2)
MIWTANISRENAFKAAINELRQMPFLKNKEVFIAAFFLLVFSSTSLSYWLLDYSWLEQQR
ITQLMLLVAASAALQLGYWRRPGAFVPPNNTVLLAFILGLASALLSQHPQWALKEWAKYA
SSFALIVYLGHLLRQAAAQQVVLFILFVTSALLAVQFLAFYIASFFTGTRDVNPYLMYPG
FDNPRFYGQFQIILIPILHGLSLQQGWHKKLFNQNAIQLTLLLQWCIVWALAGRGVLLGL
CIASVATLLATGVRYKALLLQAVAFALAGLALYFLLFFCFPEWAGLARDTPSGLRFDLSK
RDVLWQGAWKMIKANPFLGVGPLHYSAVWNHIGAHPHQATLQFLAEWGIPATLLFLFSII
TGMLRGASIIRNNTDVLDAALWMALLASLTLAQVDGVFAMPYTEGWLAVIAGLALARWRS
PSGAAAMNSPIRQGMFFVLLLLAITIIGRILILDVPVLHETSMKFYKEHGIGSPPRFWDQ
GWIPM