Protein Info for HP15_3158 in Marinobacter adhaerens HP15

Annotation: binding-protein-dependent transport systems inner membrane component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details amino acids 30 to 30 (1 residues), see Phobius details transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 77 to 101 (25 residues), see Phobius details amino acids 109 to 133 (25 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 93 to 261 (169 residues), 68.1 bits, see alignment E=4.5e-23

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 65% identity to ttu:TERTU_3481)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, permease protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PQ57 at UniProt or InterPro

Protein Sequence (269 amino acids)

>HP15_3158 binding-protein-dependent transport systems inner membrane component (Marinobacter adhaerens HP15)
MINHHPGRVSATLLGLLPFLLIMLIYSLASQERLADNPNDKLLPGLEQMTAAVDRMAFQE
DRRSGDYLMWQDTTASLARLGMGVGIAASLALVVGILNGVLPLVRANLAPLVSALSMVPP
LAILPILFIVFGLGELSKVMLIVIGTAPIMMRDVAQRVRELPGEQLIKIQTLGANSWQVI
TRMALPQVLPRLIDAVRLSLGPAWLFLIAAEAIASTEGLGYRIFLVRRYLAMDVILPYVI
WITILAIVIDQCLRLANRRLFPWYNAGGH