Protein Info for Psest_0321 in Pseudomonas stutzeri RCH2

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 55 to 80 (26 residues), see Phobius details amino acids 102 to 128 (27 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 198 to 216 (19 residues), see Phobius details amino acids 222 to 245 (24 residues), see Phobius details PF01061: ABC2_membrane" amino acids 5 to 216 (212 residues), 100 bits, see alignment E=1.4e-32 PF12698: ABC2_membrane_3" amino acids 55 to 243 (189 residues), 36.7 bits, see alignment E=2.7e-13

Best Hits

Swiss-Prot: 37% identical to YADH_SHIFL: Inner membrane transport permease YadH (yadH) from Shigella flexneri

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 98% identity to psa:PST_3928)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGP5 at UniProt or InterPro

Protein Sequence (253 amino acids)

>Psest_0321 Predicted membrane protein (Pseudomonas stutzeri RCH2)
MNFYAIRAIYLFELARTWRTLLQSIATPVISTSLYFVVFGSAIGARMEAMHGIPYGAFII
PGLIMMALLSESISNASFGIYMPRYSGTIYEVLSAPVSYVEIVIGYVGAAATKSLVLGVI
ILITARLFVDYQIQHPLMMALFLVLTAITFCLFGFIIGIWADGWEKLQIVPALIVTPLAF
LGGSFYSIEMLPPLWQKITLFNPVVYLISGFRWSFYGVSDISVGISLAMILGFLAACLLA
VWWIFKTGYRLKN