Protein Info for Psest_3173 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 PF03883: H2O2_YaaD" amino acids 1 to 243 (243 residues), 321.3 bits, see alignment E=3.7e-100

Best Hits

Swiss-Prot: 88% identical to Y1170_PSEU5: UPF0246 protein PST_1170 (PST_1170) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: K09861, hypothetical protein (inferred from 88% identity to psa:PST_1170)

Predicted SEED Role

"UPF0246 protein YaaA" in subsystem YaaA

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLP4 at UniProt or InterPro

Protein Sequence (259 amino acids)

>Psest_3173 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MLMVISPAKTLDYETPPITERFTQPQYLEHSQLLIEQLRDYSPAQISELMHLSDKLAALN
VARYGSWSDKFTPDNARQALLAFKGDVYTGLSVEDFTDSDLLFAQQHLRMLSGLYGLLRP
LDLMQPYRLEMGTKLANPRGKDLYAFWGERISEWLNEALAEQGDDVLLNLASNEYFTAVK
RKALNARVINVDFKDMKNGQYKIISFYAKKARGLMARWVIKERVSDPAQLSAFDYEGYRY
SPDASSADHLVFLRDTTHQ