Protein Info for PGA1_c31460 in Phaeobacter inhibens DSM 17395

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR02231: conserved hypothetical protein" amino acids 45 to 564 (520 residues), 204.3 bits, see alignment E=1.8e-64 PF13600: DUF4140" amino acids 49 to 143 (95 residues), 66 bits, see alignment E=3.6e-22 PF13598: DUF4139" amino acids 254 to 563 (310 residues), 157.9 bits, see alignment E=2.9e-50

Best Hits

Predicted SEED Role

"Mucoidy inhibitor A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ER64 at UniProt or InterPro

Protein Sequence (568 amino acids)

>PGA1_c31460 conserved hypothetical protein (Phaeobacter inhibens DSM 17395)
MSRNVHQSREIMRSAFSIFTFSATLAVTTHIASAAVSDVIQVDSQVAAVTLYPGLAQITR
TADVVLPEGRHELILQGVPRSAETASLQVQIDGARRISTRVRDEFVPPRDASTPEIEAAE
ARIDEIETQIAAVEDEAARARAAAHAARSSIHFLEQLGNNDGLVGTDASALADISLMISR
RAAENHRQVVDAEADARSKEQALATLQENLTEARAALAALTTEDDDRLYIEVAVEAAAAG
ATSIRLDYLTEGAGNIGWSPSYELHLTTGGDPELTLNRSVILSQDTGENWQDVALTLSTA
EPLGQSGPSRLFPQLRRIEKPMPVPTSKQRLSSDMELDLANEPIIEAAVVVDEILRQWSV
DRSGVAAVYGFDTPVSVASGAEALRLEMDSLKTTATLTAQAVPLRNETAYRMVRFTNEFG
EQLLAATQAAHFVDGKLIAVADFAGLAPGAEADLGFGAIKGLTLSRDILDQSEGEQGLIS
RSSEQVRRVEIEVKNLTDRAWPLRVLDRVPYSQQDALEIAWDARPAPTEENVEKQRGILA
WDMEIAAGATEVIEIETELSWPEGQILR