Protein Info for Psest_3150 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 PF05272: VapE-like_dom" amino acids 129 to 269 (141 residues), 28.1 bits, see alignment E=1.4e-10 PF19263: DUF5906" amino acids 155 to 263 (109 residues), 64.1 bits, see alignment E=1.9e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNR5 at UniProt or InterPro

Protein Sequence (419 amino acids)

>Psest_3150 hypothetical protein (Pseudomonas stutzeri RCH2)
MTNAAPKTTNNSRNAIEAVKTRFVRVPSNNTYPRFRDLITNIDQADAGILLDFYRKNGGN
DPDVNESYILACLPWAYGEGFKPNAGPVLDGGLINLWQPSKVQPTGEKISKEQVAPFIEF
LQRWFPDELERHYFGWWLSHAVRKPDVRMIATPVLRSEHGVGKGFLVETLLSGLLGKSSV
AVCGLKDVVGDFNDVVEGKTLLLIDEVYKSKKSTTDALKSFQGNATIPLHRKHKPTITIE
NYLNFIITSNDHLPLVLEKGDRRFWIPAFIRHRESVQETAAFLNDTFKPWLLDGGFQLVR
DYLEQVDLSKHRATDAPPMTTSKQELMGFSTTDKLEDVLSDVVEANAVLTVKWVKQQYAD
EFEHGLSDMAVANALLNMGCKQRKTKLQRYYVTPFGFESGINLDSTAKELEEAMPSKSF