Protein Info for PGA1_c31300 in Phaeobacter inhibens DSM 17395

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 PF00005: ABC_tran" amino acids 23 to 164 (142 residues), 108.4 bits, see alignment E=6.9e-35 PF08402: TOBE_2" amino acids 287 to 358 (72 residues), 26.7 bits, see alignment E=7.6e-10

Best Hits

KEGG orthology group: None (inferred from 58% identity to mme:Marme_4002)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F0Q3 at UniProt or InterPro

Protein Sequence (370 amino acids)

>PGA1_c31300 ABC transporter ATP-binding protein (Phaeobacter inhibens DSM 17395)
MSAGVGVDLEKLWIRFGDFVAVRDANVKINGGDFFSFLGPSGCGKTTILRAVSGFLEPSE
GNVLIGGNNMRGIGPNKRPTALIFQNLALFPLMKVWENITFSMEIKGASAKDRRKRADEL
LDMIALPGQGDKLPSELSGGQRQRVAIARALCAEPDVLLLDEPLSALDLKLRQHMRTELR
EIQQRVGITFIYITHDQGEALTMSDNIAVMRAGVIDQIGNGKAVYNDPATAFAASFVGEN
NVFRGKVKRVMGNEALIATNRSGDLVARISSANQGKMKEGDDAMMFIRPEAFALAPQGAT
GDHVVSAKVNHEEFEGNAFNIFMEGDGGKELKVSIPNLGQSFEDHTGQTITLEYETQNAV
IVPAGELAAE